IL_9M0P_222

3D structure

PDB id

9M0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosome in complex with montanine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9M0P_222 not in the Motif Atlas

Homologous match to IL_9H3G_223

Geometric discrepancy: 0.2552

The information below is about IL_9H3G_223

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9M0P|1|S2|U|1347
9M0P|1|S2|G|1348
9M0P|1|S2|G|1349
*
9M0P|1|S2|C|1380
9M0P|1|S2|G|1381
9M0P|1|S2|A|1382

Current chains

Chain S2

18S ribosomal RNA|HOMO SAPIENS

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SC

40S ribosomal protein S2

Chain SR

40S ribosomal protein S17