IL_9M6C_010

3D structure

PDB id

9M6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of xanthine/guanine RNA aptamer with xanthine

Experimental method

X-RAY DIFFRACTION

Resolution

2.51 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9M6C|1|B|U|20||||7_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9M6C_010 not in the Motif Atlas

Geometric match to IL_9PN5_121

Geometric discrepancy: 0.1033

The information below is about IL_9PN5_121

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9M6C|1|B|C|15||||7_555
9M6C|1|B|C|16||||7_555
*
9M6C|1|B|G|19||||7_555
9M6C|1|B|U|20||||7_555
9M6C|1|B|G|21||||7_555

Current chains

Chain B

RNA (32-MER)

Nearby chains

Chain A

RNA (32-MER)