IL_9M86_003

3D structure

PDB id

9M86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SpMETTL16 kinase associated 1 domain in complex with U6 snRNA internal stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

2.795 Å

Loop

Sequence

CCC*GAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9M86_003 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2758

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9M86|1|B|C|54
9M86|1|B|C|55
9M86|1|B|C|56
*
9M86|1|B|G|66
9M86|1|B|A|67
9M86|1|B|U|68
9M86|1|B|G|69

Current chains

Chain B

RNA (31-MER)

Nearby chains

Chain A

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase

Chain C

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase