IL_9MDS_005

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAAUGACU*ACCCGUAAGAAG

Length

22 nucleotides

Bulged bases

9MDS|1|A|G|158, 9MDS|1|A|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|A|U|135
9MDS|1|A|A|136
9MDS|1|A|U|137
9MDS|1|A|A|138
9MDS|1|A|A|139
9MDS|1|A|U|140
9MDS|1|A|G|141
9MDS|1|A|A|142
9MDS|1|A|C|143
9MDS|1|A|U|144
*
9MDS|1|A|A|154
9MDS|1|A|C|155
9MDS|1|A|C|156
9MDS|1|A|C|157
9MDS|1|A|G|158
9MDS|1|A|U|159
9MDS|1|A|A|160
9MDS|1|A|A|161
9MDS|1|A|G|162
9MDS|1|A|A|163
9MDS|1|A|A|164
9MDS|1|A|G|165

Current chains

Chain A

RNA (598-MER)

Nearby chains