IL_9MDS_062

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAC*GAU

Length

7 nucleotides

Bulged bases

9MDS|1|F|A|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MDS_062 not in the Motif Atlas

Geometric match to IL_5T3K_001

Geometric discrepancy: 0.1893

The information below is about IL_5T3K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9MDS|1|F|A|226
9MDS|1|F|G|227
9MDS|1|F|A|228
9MDS|1|F|C|229
*
9MDS|1|F|G|607
9MDS|1|F|A|608
9MDS|1|F|U|609

Current chains

Chain F

RNA (598-MER)

Nearby chains

Chain D

RNA (598-MER)