IL_9MEE_028

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_028 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1274

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9MEE|1|B|A|303
9MEE|1|B|U|304
9MEE|1|B|U|305
9MEE|1|B|G|306
*
9MEE|1|B|C|315
9MEE|1|B|U|316
9MEE|1|B|U|317
9MEE|1|B|U|318

Current chains

Chain B

GOLLD RNA nanocage

Nearby chains