IL_9MEE_061

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAGG*UAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_061 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.1321

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9MEE|1|D|A|238
9MEE|1|D|G|239
9MEE|1|D|A|240
9MEE|1|D|G|241
9MEE|1|D|G|242
*
9MEE|1|D|U|264
9MEE|1|D|A|265
9MEE|1|D|A|266
9MEE|1|D|U|267

Current chains

Chain D

GOLLD RNA nanocage

Nearby chains