IL_9MEE_129

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGUAU*AGAGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_129 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1844

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9MEE|1|H|U|130
9MEE|1|H|A|131
9MEE|1|H|G|132
9MEE|1|H|U|133
9MEE|1|H|A|134
9MEE|1|H|U|135
*
9MEE|1|H|A|155
9MEE|1|H|G|156
9MEE|1|H|A|157
9MEE|1|H|G|158
9MEE|1|H|G|159

Current chains

Chain H

GOLLD RNA nanocage

Nearby chains