IL_9MEE_157

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGU*ACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_157 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.1987

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9MEE|1|I|G|363
9MEE|1|I|A|364
9MEE|1|I|G|365
9MEE|1|I|U|366
*
9MEE|1|I|A|375
9MEE|1|I|C|376
9MEE|1|I|C|377

Current chains

Chain I

GOLLD RNA nanocage

Nearby chains

Chain J

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA