IL_9MEE_228

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_228 not in the Motif Atlas

Geometric match to IL_3TD0_006

Geometric discrepancy: 0.1464

The information below is about IL_3TD0_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9MEE|1|M|C|355
9MEE|1|M|U|356
9MEE|1|M|U|357
*
9MEE|1|M|A|383
9MEE|1|M|U|384
9MEE|1|M|G|385

Current chains

Chain M

GOLLD RNA nanocage

Nearby chains