IL_9MNC_072

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

9MNC|1|L5|U|2070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_072 not in the Motif Atlas

Homologous match to IL_8GLP_075

Geometric discrepancy: 0.042

The information below is about IL_8GLP_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.4

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9MNC|1|L5|U|1905
9MNC|1|L5|U|1906
9MNC|1|L5|A|1907
9MNC|1|L5|A|1908
9MNC|1|L5|G|1909
*
9MNC|1|L5|C|2067
9MNC|1|L5|C|2068
9MNC|1|L5|A|2069
9MNC|1|L5|U|2070
9MNC|1|L5|A|2071

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L9

5S ribosomal RNA; 5S rRNA

Chain LF

Large ribosomal subunit protein uL30

Chain LI

Large ribosomal subunit protein eL32

Chain Lf

Large ribosomal subunit protein eL33

Chain Lj

Large ribosomal subunit protein eL18