IL_9MNC_078

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9MNC|1|L5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_078 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.0498

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9MNC|1|L5|G|1946
9MNC|1|L5|U|1947
9MNC|1|L5|G|1948
*
9MNC|1|L5|C|2035
9MNC|1|L5|C|2036

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L9

5S ribosomal RNA; 5S rRNA

Chain LH

Large ribosomal subunit protein uL6

Chain LS

Large ribosomal subunit protein eL20

Chain Lo

Large ribosomal subunit protein eL40