IL_9MNC_083
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 9MNC|1|L5|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MNC_083 not in the Motif Atlas
- Homologous match to IL_8GLP_086
- Geometric discrepancy: 0.0499
- The information below is about IL_8GLP_086
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 31
Unit IDs
9MNC|1|L5|C|2302
9MNC|1|L5|C|2303
9MNC|1|L5|U|2304
9MNC|1|L5|U|2305
9MNC|1|L5|G|2306
9MNC|1|L5|A|2307
9MNC|1|L5|A|2308
9MNC|1|L5|G|2309
*
9MNC|1|L5|U|2329
9MNC|1|L5|G|2330
9MNC|1|L5|G|2331
9MNC|1|L5|A|2332
9MNC|1|L5|G|2333
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LE
- Large ribosomal subunit protein uL24
- Chain LI
- Large ribosomal subunit protein eL32
Coloring options: