IL_9MNC_087

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

9MNC|1|L5|A|2428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_087 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.0506

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9MNC|1|L5|OMU|2415
9MNC|1|L5|G|2416
9MNC|1|L5|A|2417
9MNC|1|L5|A|2418
9MNC|1|L5|C|2419
*
9MNC|1|L5|G|2427
9MNC|1|L5|A|2428
9MNC|1|L5|A|2429

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL39

Chain Lh

Large ribosomal subunit protein uL22