IL_9MNC_125

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

9MNC|1|L5|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_125 not in the Motif Atlas

Homologous match to IL_9AXU_093

Geometric discrepancy: 0.1195

The information below is about IL_9AXU_093

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9MNC|1|L5|G|4291
9MNC|1|L5|A|4292
9MNC|1|L5|PSU|4293
*
9MNC|1|L5|A|4317
9MNC|1|L5|C|4318

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lb

Large ribosomal subunit protein eL29

Chain Le

Large ribosomal subunit protein eL42