IL_9MNC_131

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_131 not in the Motif Atlas

Homologous match to IL_8GLP_145

Geometric discrepancy: 0.0522

The information below is about IL_8GLP_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9MNC|1|L5|C|4412
9MNC|1|L5|C|4413
9MNC|1|L5|A|4414
9MNC|1|L5|A|4415
9MNC|1|L5|G|4416
*
9MNC|1|L5|C|4426
9MNC|1|L5|G|4427
9MNC|1|L5|A|4428
9MNC|1|L5|C|4429
9MNC|1|L5|G|4430

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lo

Large ribosomal subunit protein eL40

Chain Lz

Large ribosomal subunit protein uL16