IL_9MNC_134

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9MNC|1|L5|A|4518, 9MNC|1|L5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_134 not in the Motif Atlas

Homologous match to IL_9PN5_104

Geometric discrepancy: 0.076

The information below is about IL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

9MNC|1|L5|C|4458
9MNC|1|L5|U|4459
*
9MNC|1|L5|A|4517
9MNC|1|L5|A|4518
9MNC|1|L5|C|4519
9MNC|1|L5|G|4520

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14

Chain LY

Large ribosomal subunit protein uL13