IL_9MNC_152
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CCUCGGAUAG*U(OMG)C(2MG)GAGUG
- Length
- 19 nucleotides
- Bulged bases
- 9MNC|1|L5|C|4757, 9MNC|1|L5|U|4758, 9MNC|1|L5|A|4764, 9MNC|1|L5|OMG|4870, 9MNC|1|L5|C|4871, 9MNC|1|L5|G|4873, 9MNC|1|L5|U|4876
- QA status
- Modified nucleotides: OMG, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MNC|1|L5|C|4756
9MNC|1|L5|C|4757
9MNC|1|L5|U|4758
9MNC|1|L5|C|4759
9MNC|1|L5|G|4760
9MNC|1|L5|G|4761
9MNC|1|L5|A|4762
9MNC|1|L5|U|4763
9MNC|1|L5|A|4764
9MNC|1|L5|G|4765
*
9MNC|1|L5|U|4869
9MNC|1|L5|OMG|4870
9MNC|1|L5|C|4871
9MNC|1|L5|2MG|4872
9MNC|1|L5|G|4873
9MNC|1|L5|A|4874
9MNC|1|L5|G|4875
9MNC|1|L5|U|4876
9MNC|1|L5|G|4877
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LH
- Large ribosomal subunit protein uL6
- Chain LK
- Large ribosomal subunit protein eL6
- Chain LM
- Large ribosomal subunit protein eL14
- Chain LS
- Large ribosomal subunit protein eL20
- Chain LY
- Large ribosomal subunit protein uL13
Coloring options: