IL_9MNC_164

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9MNC|1|L9|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_164 not in the Motif Atlas

Geometric match to IL_8QYX_165

Geometric discrepancy: 0.0735

The information below is about IL_8QYX_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9MNC|1|L9|C|15
9MNC|1|L9|A|16
*
9MNC|1|L9|U|62
9MNC|1|L9|C|63
9MNC|1|L9|G|64

Current chains

Chain L9

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain L8

Large ribosomal subunit protein uL18

Chain LJ

Large ribosomal subunit protein uL5

Chain Lz

Large ribosomal subunit protein uL16