IL_9MNC_178

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

G(PSU)U*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_178 not in the Motif Atlas

Geometric match to IL_8OI5_115

Geometric discrepancy: 0.1719

The information below is about IL_8OI5_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9MNC|1|S2|G|108
9MNC|1|S2|PSU|109
9MNC|1|S2|U|110
*
9MNC|1|S2|G|351
9MNC|1|S2|U|352
9MNC|1|S2|C|353

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17