IL_9MNC_222
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MNC_222 not in the Motif Atlas
- Geometric match to IL_8GLP_245
- Geometric discrepancy: 0.0756
- The information below is about IL_8GLP_245
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.5
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 67
Unit IDs
9MNC|1|S2|U|1101
9MNC|1|S2|G|1102
9MNC|1|S2|C|1103
*
9MNC|1|S2|G|1129
9MNC|1|S2|G|1130
9MNC|1|S2|G|1131
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain S1
- Small ribosomal subunit protein eS1
- Chain SN
- Small ribosomal subunit protein uS15
- Chain SS
- Small ribosomal subunit protein eS17
- Chain Sa
- Small ribosomal subunit protein eS26
- Chain Sb
- Small ribosomal subunit protein eS27
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