IL_9MNC_225

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9MNC|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_225 not in the Motif Atlas

Homologous match to IL_9H3G_210

Geometric discrepancy: 0.0539

The information below is about IL_9H3G_210

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9MNC|1|S2|G|1203
9MNC|1|S2|A|1204
*
9MNC|1|S2|U|1694
9MNC|1|S2|A|1695
9MNC|1|S2|C|1696

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

Small ribosomal subunit protein uS5

Chain Sa

Small ribosomal subunit protein eS26