IL_9MOR_126

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_126 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.3512

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9MOR|1|2|U|409
9MOR|1|2|G|410
9MOR|1|2|A|411
9MOR|1|2|A|412
9MOR|1|2|G|413
9MOR|1|2|A|414
9MOR|1|2|A|415
9MOR|1|2|G|416
*
9MOR|1|2|U|427
9MOR|1|2|G|428
9MOR|1|2|U|429
9MOR|1|2|A|430
9MOR|1|2|A|431
9MOR|1|2|A|432
9MOR|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4