IL_9MOR_151

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAGUU*AAUGUGCCUUCGGGAAC

Length

23 nucleotides

Bulged bases

9MOR|1|2|U|1030, 9MOR|1|2|C|1031, 9MOR|1|2|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_151 not in the Motif Atlas

Homologous match to IL_5J7L_045

Geometric discrepancy: 0.3329

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

9MOR|1|2|G|1003
9MOR|1|2|A|1004
9MOR|1|2|A|1005
9MOR|1|2|G|1006
9MOR|1|2|U|1007
9MOR|1|2|U|1008
*
9MOR|1|2|A|1021
9MOR|1|2|A|1022
9MOR|1|2|U|1023
9MOR|1|2|G|1024
9MOR|1|2|U|1025
9MOR|1|2|G|1026
9MOR|1|2|C|1027
9MOR|1|2|C|1028
9MOR|1|2|U|1029
9MOR|1|2|U|1030
9MOR|1|2|C|1031
9MOR|1|2|G|1032
9MOR|1|2|G|1033
9MOR|1|2|G|1034
9MOR|1|2|A|1035
9MOR|1|2|A|1036
9MOR|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14