IL_9MQ4_009

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9MQ4|1|1|U|276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3133

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9MQ4|1|1|C|274
9MQ4|1|1|C|275
9MQ4|1|1|U|276
9MQ4|1|1|G|277
9MQ4|1|1|A|278
9MQ4|1|1|A|279
9MQ4|1|1|U|280
9MQ4|1|1|C|281
*
9MQ4|1|1|G|359
9MQ4|1|1|U|360
9MQ4|1|1|G|361
9MQ4|1|1|A|362
9MQ4|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains