IL_9MQ4_023

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9MQ4|1|1|U|846, 9MQ4|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_023 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.2795

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9MQ4|1|1|A|844
9MQ4|1|1|A|845
9MQ4|1|1|U|846
9MQ4|1|1|U|847
9MQ4|1|1|C|848
*
9MQ4|1|1|G|930
9MQ4|1|1|U|931
9MQ4|1|1|U|932
9MQ4|1|1|A|933
9MQ4|1|1|U|934

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30