IL_9MQ4_063

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_063 not in the Motif Atlas

Geometric match to IL_8VTW_065

Geometric discrepancy: 0.0805

The information below is about IL_8VTW_065

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9MQ4|1|1|G|1666
9MQ4|1|1|G|1667
9MQ4|1|1|A|1668
9MQ4|1|1|A|1669
*
9MQ4|1|1|U|1993
9MQ4|1|1|C|1994

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14