IL_9MQ4_087

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

9MQ4|1|1|G|2125, 9MQ4|1|1|G|2162, 9MQ4|1|1|U|2167, 9MQ4|1|1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MQ4|1|1|G|2124
9MQ4|1|1|G|2125
9MQ4|1|1|A|2126
9MQ4|1|1|G|2127
*
9MQ4|1|1|C|2161
9MQ4|1|1|G|2162
9MQ4|1|1|A|2163
9MQ4|1|1|C|2164
9MQ4|1|1|C|2165
9MQ4|1|1|U|2166
9MQ4|1|1|U|2167
9MQ4|1|1|G|2168
9MQ4|1|1|A|2169
9MQ4|1|1|A|2170
9MQ4|1|1|A|2171
9MQ4|1|1|U|2172
9MQ4|1|1|A|2173
9MQ4|1|1|C|2174

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA