IL_9MQ4_088

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9MQ4|1|1|U|2131, 9MQ4|1|1|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_088 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.307

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9MQ4|1|1|C|2129
9MQ4|1|1|U|2130
9MQ4|1|1|U|2131
9MQ4|1|1|U|2132
9MQ4|1|1|G|2133
9MQ4|1|1|A|2134
9MQ4|1|1|A|2135
9MQ4|1|1|G|2136
*
9MQ4|1|1|U|2155
9MQ4|1|1|G|2156
9MQ4|1|1|G|2157
9MQ4|1|1|A|2158
9MQ4|1|1|G|2159

Current chains

Chain 1

23S ribosomal RNA

Nearby chains