IL_9MQ4_094

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

(PSU)GA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_094 not in the Motif Atlas

Homologous match to IL_4WF9_091

Geometric discrepancy: 0.145

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9MQ4|1|1|PSU|2457
9MQ4|1|1|G|2458
9MQ4|1|1|A|2459
*
9MQ4|1|1|U|2493
9MQ4|1|1|G|2494

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

Peptide chain release factor H

Chain M

50S ribosomal protein L16