IL_9MQ4_095

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9MQ4|1|1|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_095 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.1932

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9MQ4|1|1|A|2459
9MQ4|1|1|U|2460
9MQ4|1|1|A|2461
*
9MQ4|1|1|U|2489
9MQ4|1|1|G|2490
9MQ4|1|1|U|2491
9MQ4|1|1|U|2492
9MQ4|1|1|U|2493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

Peptide chain release factor H

Chain M

50S ribosomal protein L16