IL_9MQ4_134

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9MQ4|1|2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_134 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1315

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9MQ4|1|2|G|446
9MQ4|1|2|G|447
9MQ4|1|2|A|448
9MQ4|1|2|G|449
9MQ4|1|2|G|450
*
9MQ4|1|2|C|483
9MQ4|1|2|G|484
9MQ4|1|2|U|485
9MQ4|1|2|U|486
9MQ4|1|2|A|487
9MQ4|1|2|C|488

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16