IL_9MQ4_138

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9MQ4|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_138 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1081

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9MQ4|1|2|C|569
9MQ4|1|2|G|570
9MQ4|1|2|U|571
9MQ4|1|2|A|572
9MQ4|1|2|A|573
9MQ4|1|2|A|574
9MQ4|1|2|G|575
*
9MQ4|1|2|C|880
9MQ4|1|2|G|881

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS8

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17