IL_9MQ4_140

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_140 not in the Motif Atlas

Homologous match to IL_5J7L_028

Geometric discrepancy: 0.2058

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

9MQ4|1|2|U|594
9MQ4|1|2|A|595
9MQ4|1|2|A|596
*
9MQ4|1|2|U|644
9MQ4|1|2|G|645

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS8

Chain v

Small ribosomal subunit protein uS17