IL_9MQ4_149
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MQ4_149 not in the Motif Atlas
- Homologous match to IL_4LFB_033
- Geometric discrepancy: 0.0827
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9MQ4|1|2|C|779
9MQ4|1|2|A|780
9MQ4|1|2|A|781
9MQ4|1|2|A|782
9MQ4|1|2|C|783
*
9MQ4|1|2|G|799
9MQ4|1|2|G|800
9MQ4|1|2|U|801
9MQ4|1|2|A|802
9MQ4|1|2|G|803
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain p
- 30S ribosomal protein S11
- Chain z
- 30S ribosomal protein S21
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