IL_9MQ4_157

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAGUU*AAUGUGCCUUCGGGAAC

Length

23 nucleotides

Bulged bases

9MQ4|1|2|U|1030, 9MQ4|1|2|C|1031, 9MQ4|1|2|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_157 not in the Motif Atlas

Homologous match to IL_5J7L_045

Geometric discrepancy: 0.2976

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

9MQ4|1|2|G|1003
9MQ4|1|2|A|1004
9MQ4|1|2|A|1005
9MQ4|1|2|G|1006
9MQ4|1|2|U|1007
9MQ4|1|2|U|1008
*
9MQ4|1|2|A|1021
9MQ4|1|2|A|1022
9MQ4|1|2|U|1023
9MQ4|1|2|G|1024
9MQ4|1|2|U|1025
9MQ4|1|2|G|1026
9MQ4|1|2|C|1027
9MQ4|1|2|C|1028
9MQ4|1|2|U|1029
9MQ4|1|2|U|1030
9MQ4|1|2|C|1031
9MQ4|1|2|G|1032
9MQ4|1|2|G|1033
9MQ4|1|2|G|1034
9MQ4|1|2|A|1035
9MQ4|1|2|A|1036
9MQ4|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14