IL_9MQ4_165

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

9MQ4|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_165 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1521

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9MQ4|1|2|C|1158
9MQ4|1|2|U|1159
9MQ4|1|2|G|1160
9MQ4|1|2|C|1161
*
9MQ4|1|2|G|1175
9MQ4|1|2|A|1176
9MQ4|1|2|G|1177
9MQ4|1|2|G|1178
9MQ4|1|2|A|1179
9MQ4|1|2|A|1180
9MQ4|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain n

Small ribosomal subunit protein uS9