IL_9MQ4_168

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_168 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1948

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9MQ4|1|2|C|1259
9MQ4|1|2|G|1260
9MQ4|1|2|A|1261
9MQ4|1|2|C|1262
9MQ4|1|2|C|1263
*
9MQ4|1|2|G|1272
9MQ4|1|2|C|1273
9MQ4|1|2|A|1274
9MQ4|1|2|A|1275
9MQ4|1|2|G|1276

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14

Chain x

Small ribosomal subunit protein uS19