IL_9MQ4_169

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_169 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0979

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9MQ4|1|2|C|1303
9MQ4|1|2|G|1304
9MQ4|1|2|G|1305
9MQ4|1|2|A|1306
9MQ4|1|2|U|1307
9MQ4|1|2|U|1308
*
9MQ4|1|2|A|1329
9MQ4|1|2|U|1330
9MQ4|1|2|G|1331
9MQ4|1|2|A|1332
9MQ4|1|2|A|1333
9MQ4|1|2|G|1334

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13