IL_9MQ4_173
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MQ4_173 not in the Motif Atlas
- Geometric match to IL_6DME_003
- Geometric discrepancy: 0.3889
- The information below is about IL_6DME_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75527.1
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 10
Unit IDs
9MQ4|1|2|5MC|1407
9MQ4|1|2|A|1408
9MQ4|1|2|C|1409
*
9MQ4|1|2|G|1491
9MQ4|1|2|A|1492
9MQ4|1|2|A|1493
9MQ4|1|2|G|1494
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 7
- mRNA
- Chain A
- Peptide chain release factor H
- Chain q
- Small ribosomal subunit protein uS12
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