IL_9MR4_075

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

9MR4|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MR4_075 not in the Motif Atlas

Homologous match to IL_8GLP_078

Geometric discrepancy: 0.1631

The information below is about IL_8GLP_078

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9MR4|1|5|C|1920
9MR4|1|5|C|1921
9MR4|1|5|G|1922
*
9MR4|1|5|C|2062
9MR4|1|5|G|2063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain M

60S ribosomal protein L14

Chain O

Large ribosomal subunit protein uL13

Chain S

Large ribosomal subunit protein eL20

Chain f

eL33