IL_9MR4_236

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9MR4|1|K|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MR4_236 not in the Motif Atlas

Homologous match to IL_9PN5_209

Geometric discrepancy: 0.1281

The information below is about IL_9PN5_209

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9MR4|1|K|C|1337
9MR4|1|K|G|1338
*
9MR4|1|K|C|1488
9MR4|1|K|A|1489
9MR4|1|K|G|1490

Current chains

Chain K

18S rRNA

Nearby chains

Chain 9

eS29

Chain GG

uS10

Chain UU

uS9

Chain v

Small ribosomal subunit protein uS5

Chain w

Ribosomal protein S3