IL_9MTP_052

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

9MTP|1|1A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_052 not in the Motif Atlas

Geometric match to IL_9DFE_054

Geometric discrepancy: 0.0639

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9MTP|1|1A|C|1417
9MTP|1|1A|G|1418
9MTP|1|1A|A|1419
9MTP|1|1A|U|1420
9MTP|1|1A|G|1421
*
9MTP|1|1A|C|1577
9MTP|1|1A|U|1578
9MTP|1|1A|A|1579
9MTP|1|1A|A|1580
9MTP|1|1A|G|1581

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains