IL_9MTP_072

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_072 not in the Motif Atlas

Geometric match to IL_9DFE_074

Geometric discrepancy: 0.0746

The information below is about IL_9DFE_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9MTP|1|1A|U|1851
9MTP|1|1A|C|1852
9MTP|1|1A|A|1853
9MTP|1|1A|A|1854
9MTP|1|1A|G|1855
*
9MTP|1|1A|C|1887
9MTP|1|1A|G|1888
9MTP|1|1A|A|1889
9MTP|1|1A|A|1890
9MTP|1|1A|G|1891

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28