IL_9MTP_093

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_093 not in the Motif Atlas

Geometric match to IL_9DFE_095

Geometric discrepancy: 0.0588

The information below is about IL_9DFE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9MTP|1|1A|C|2466
9MTP|1|1A|C|2467
9MTP|1|1A|G|2468
9MTP|1|1A|A|2469
9MTP|1|1A|G|2470
*
9MTP|1|1A|C|2480
9MTP|1|1A|G|2481
9MTP|1|1A|G|2482
9MTP|1|1A|C|2483
9MTP|1|1A|G|2484

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1Q

50S ribosomal protein L16

Chain 1w

Peptide chain release factor 1