IL_9MTP_100

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_100 not in the Motif Atlas

Geometric match to IL_9DFE_102

Geometric discrepancy: 0.0479

The information below is about IL_9DFE_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9MTP|1|1A|C|2652
9MTP|1|1A|U|2653
9MTP|1|1A|A|2654
9MTP|1|1A|G|2655
9MTP|1|1A|U|2656
9MTP|1|1A|A|2657
9MTP|1|1A|C|2658
*
9MTP|1|1A|G|2663
9MTP|1|1A|G|2664
9MTP|1|1A|A|2665
9MTP|1|1A|C|2666
9MTP|1|1A|C|2667
9MTP|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6