IL_9MTP_107

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_107 not in the Motif Atlas

Geometric match to IL_9DFE_109

Geometric discrepancy: 0.0543

The information below is about IL_9DFE_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9MTP|1|1A|U|2847
9MTP|1|1A|G|2848
9MTP|1|1A|U|2849
9MTP|1|1A|A|2850
9MTP|1|1A|A|2851
9MTP|1|1A|G|2852
*
9MTP|1|1A|U|2865
9MTP|1|1A|U|2866
9MTP|1|1A|G|2867
9MTP|1|1A|A|2868
9MTP|1|1A|G|2869

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA