IL_9MTP_189

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9MTP|1|2A|G|801, 9MTP|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_189 not in the Motif Atlas

Geometric match to IL_9DFE_016

Geometric discrepancy: 0.0538

The information below is about IL_9DFE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9MTP|1|2A|G|674
9MTP|1|2A|A|675
9MTP|1|2A|A|676
9MTP|1|2A|A|677
9MTP|1|2A|C|678
*
9MTP|1|2A|G|799
9MTP|1|2A|A|800
9MTP|1|2A|G|801
9MTP|1|2A|A|802
9MTP|1|2A|U|803
9MTP|1|2A|A|804
9MTP|1|2A|G|805
9MTP|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15