IL_9MTP_207

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9MTP|1|2A|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MTP_207 not in the Motif Atlas

Geometric match to IL_9DFE_035

Geometric discrepancy: 0.0697

The information below is about IL_9DFE_035

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9MTP|1|2A|C|998
9MTP|1|2A|U|999
9MTP|1|2A|A|1000
9MTP|1|2A|A|1001
9MTP|1|2A|G|1002
*
9MTP|1|2A|C|1153
9MTP|1|2A|G|1154
9MTP|1|2A|A|1155
9MTP|1|2A|A|1156
9MTP|1|2A|G|1157

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21