3D structure

PDB id
9MTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
9MTP|1|2A|G|1801, 9MTP|1|2A|G|1816, 9MTP|1|2A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MTP_239 not in the Motif Atlas
Geometric match to IL_9DFE_070
Geometric discrepancy: 0.0501
The information below is about IL_9DFE_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

9MTP|1|2A|U|1798
9MTP|1|2A|G|1799
9MTP|1|2A|C|1800
9MTP|1|2A|G|1801
9MTP|1|2A|A|1802
9MTP|1|2A|A|1803
9MTP|1|2A|C|1804
*
9MTP|1|2A|G|1813
9MTP|1|2A|G|1814
9MTP|1|2A|A|1815
9MTP|1|2A|G|1816
9MTP|1|2A|G|1817
9MTP|1|2A|U|1818
9MTP|1|2A|A|1819
9MTP|1|2A|U|1820
9MTP|1|2A|A|1821

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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